There's a different (and higher) standard (burden) of proof in a District
court than in front of the PTO. It can cause inconsistent results. (See Judge Newman Again Questions
the Constitutionality of “Do Over” Patent Reexamination). While Judge
Newman's issue could be corrected by aligning the burden of proof between the
two venues or increasingly staying patent proceedings awaiting reexamination in
the face of 35 USC 302 ("Any person at any time may file a request for
reexamination by the Office of any claim of a patent on the basis of any prior
art cited under the provisions of section 301 of this title"), it's currently
harder to prove invalidity in the courts than the patent office due to
presumption of validity, which we seemingly find increasingly suspect, in
particular for a new field of patentability (software) lacking valid patented
prior art.
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